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For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: CTCF
wikigenes
PDBj
CellType: B cells
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
ERX664192
Illumina HiSeq 2000 paired end sequencing
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
CTCF
Cell type
Cell type Class
Blood
Cell type
B cells
NA
NA
Attributes by original data submitter
Sample
ArrayExpress-CellType
B-Lymphocyte
ArrayExpress-Immunoprecipitate
CTCF
ArrayExpress-Sex
female
ArrayExpress-Species
Homo sapiens
ENA first public
2014-11-20
ENA last update
2018-03-08
External Id
SAMEA1944367
INSDC center alias
SC
INSDC center name
Wellcome Sanger Institute
INSDC first public
2014-11-20T17:01:12Z
INSDC last update
2018-03-08T15:27:02Z
INSDC status
public
Submitter Id
GM12287-sc-2011-06-09T13:38:34Z-1162248
common name
human
sample name
GM12287-sc-2011-06-09T13:38:34Z-1162248
Sequenced DNA Library
library_name
2919716
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
ChiP-seq
Sequencing Platform
instrument_model
Illumina HiSeq 2000
Where can I get the processing logs?
Read processing pipeline
log
hg38
Number of total reads
13541384
Reads aligned (%)
99.6
Duplicates removed (%)
14.5
Number of peaks
540 (qval < 1E-05)
hg19
Number of total reads
13541384
Reads aligned (%)
97.1
Duplicates removed (%)
14.5
Number of peaks
2512 (qval < 1E-05)
Base call quality data from
DBCLS SRA